epiparameter - Library of Epidemiological Parameters with Helper Functions and Classes
Library of epidemiological parameters for infectious diseases extracted from the literature, and a set of classes and helper functions for working with parameters.
Last updated 7 hours ago
data-accessdata-packageepidemiologyepiverseprobability-distribution
8.89 score 33 stars 1 packages 95 scripts
simulist - Simulate Disease Outbreak Line List and Contacts Data
Tools to simulate realistic raw case data for an epidemic in the form of line lists and contacts using a branching process. Simulated outbreaks are parameterised with epidemiological parameters and can have age structured populations, age-stratified hospitalisation and death risk and time-varying case fatality risk.
Last updated 1 months ago
epidemiologyepiverselinelistoutbreaks
6.44 score 5 stars 23 scripts
DAISIEprep - Extracts Phylogenetic Island Community Data from Phylogenetic Trees
Extracts colonisation and branching times of island species to be used for analysis in the R package 'DAISIE'. It uses phylogenetic and endemicity data to extract the separate island colonists and store them.
Last updated 6 months ago
data-scienceisland-biogeographyphylogenetics
6.16 score 6 stars 20 scripts 195 downloads
superspreading - Estimate Individual-Level Variation in Transmission
Implements functions to estimate individual-level variation in transmission.
Last updated 21 days ago
disease-transmissionepidemiologyepiverse
6.15 score 4 stars 17 scripts